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python3Packages.nibabel: 5.3.3 -> 5.4.2 (#538403)

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Martin Weinelt 2026-07-04 16:24:36 +00:00 • committed by GitHub
commit 5d1c479b8d
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1 changed files with 12 additions and 21 deletions
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33
pkgs/development/python-modules/nibabel/default.nix
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@ -2,8 +2,6 @@
lib,
buildPythonPackage,
fetchFromGitHub,
fetchpatch2,
pythonAtLeast,
pythonOlder,
# build-system
@ -17,6 +15,9 @@
typing-extensions,
# optional-dependencies
backports-zstd,
indexed-gzip,
matplotlib,
pydicom,
pillow,
h5py,
@ -27,28 +28,21 @@
pytest-doctestplus,
pytest-httpserver,
pytest-xdist,
pytest7CheckHook,
pytestCheckHook,
}:
buildPythonPackage (finalAttrs: {
pname = "nibabel";
version = "5.3.3";
version = "5.4.2";
pyproject = true;
src = fetchFromGitHub {
owner = "nipy";
repo = "nibabel";
tag = finalAttrs.version;
hash = "sha256-Kdz7kCY5QnA9OiV/FPW1RerjP1GGLn+YaTwFpA0dJAM=";
hash = "sha256-QzkmSI0JGdIXLc3XSPZrGrBYSq98tLFrozNNopR/ytg=";
};
patches = [
(fetchpatch2 {
url = "https://github.com/nipy/nibabel/commit/3f40a3bc0c4bd996734576a15785ad0f769a963a.patch?full_index=1";
hash = "sha256-URsxgP6Sd5IIOX20GtAYtWBWOhw+Hiuhgu1oa8o8NXk=";
})
];
build-system = [
hatch-vcs
hatchling
@ -62,14 +56,14 @@ buildPythonPackage (finalAttrs: {
++ lib.optionals (pythonOlder "3.13") [ typing-extensions ];
optional-dependencies = lib.fix (self: {
all = self.dicom ++ self.dicomfs ++ self.minc2 ++ self.spm ++ self.zstd;
all = self.dicomfs ++ self.indexed_gzip ++ self.minc2 ++ self.spm ++ self.zstd;
dicom = [ pydicom ];
dicomfs = [ pillow ] ++ self.dicom;
indexed_gzip = [ indexed-gzip ];
minc2 = [ h5py ];
spm = [ scipy ];
zstd = [
# TODO: pyzstd
];
viewers = [ matplotlib ];
zstd = lib.optionals (pythonOlder "3.14") [ backports-zstd ];
});
nativeCheckInputs = [
@ -78,14 +72,11 @@ buildPythonPackage (finalAttrs: {
pytest-doctestplus
pytest-httpserver
pytest-xdist
pytest7CheckHook
pytestCheckHook
]
++ finalAttrs.passthru.optional-dependencies.all;
disabledTests = lib.optionals (pythonAtLeast "3.14") [
# https://github.com/nipy/nibabel/issues/1390
"test_deprecator_maker"
];
pythonImportsCheck = [ "nibabel" ];
meta = {
homepage = "https://nipy.org/nibabel";