mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-07-06 17:13:24 -05:00
79 lines
1.6 KiB
Nix
79 lines
1.6 KiB
Nix
{
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stdenv,
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lib,
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buildPythonPackage,
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fetchurl,
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isPyPy,
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R,
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rWrapper,
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xz,
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bzip2,
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zlib,
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zstd,
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icu,
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pytestCheckHook,
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setuptools,
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cffi,
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}:
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buildPythonPackage rec {
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version = "3.6.6";
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pyproject = true;
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pname = "rpy2-rinterface";
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disabled = isPyPy;
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src = fetchurl {
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url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${
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builtins.replaceStrings [ "-" ] [ "_" ] pname
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}-${version}.tar.gz";
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hash = "sha256-qcwTQc5ctN8dxnxA3Dss4Mr6znIVvUJi/g7QEZWKM2k=";
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};
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patches = [
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# https://github.com/rpy2/rpy2/pull/1171#issuecomment-3263994962
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./restore-initr-simple.patch
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# R_LIBS_SITE is used by the nix r package to point to the installed R libraries.
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# This patch sets R_LIBS_SITE when rpy2 is imported.
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./rpy2-3.x-r-libs-site.patch
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];
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postPatch = ''
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substituteInPlace 'src/rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE"
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'';
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buildInputs = [
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xz
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bzip2
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zlib
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zstd
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icu
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]
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++ rWrapper.recommendedPackages;
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nativeBuildInputs = [
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R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly)
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];
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propagatedBuildInputs = [
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cffi
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setuptools
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];
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nativeCheckInputs = [ pytestCheckHook ];
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# https://github.com/rpy2/rpy2/issues/1111
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disabledTests = [
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"test_parse_incomplete_error"
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"test_parse_error"
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"test_parse_error_when_evaluting"
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];
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meta = {
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homepage = "https://rpy2.github.io/";
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description = "Python interface to R";
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license = lib.licenses.gpl2Plus;
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platforms = lib.platforms.unix;
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teams = with lib.teams; [ sage ];
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};
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}
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